CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.425 rna-evm.model.Chr10.425 Chr10 13920641 13931805 PREDICTED: DNA polymerase III PolC-type nan K02342
gene-evm.TU.Chr10.427 rna-evm.model.Chr10.427 Chr10 14071576 14071977 uncharacterized protein nan K15412
gene-evm.TU.Chr10.429 rna-evm.model.Chr10.429 Chr10 14102919 14103479 uncharacterized protein nan K10064
gene-evm.TU.Chr10.432 rna-evm.model.Chr10.432 Chr10 14207333 14209023 PREDICTED: Snaclec purpureotin subunit alpha nan K10064
gene-evm.TU.Chr10.433 rna-evm.model.Chr10.433 Chr10 14209034 14210448 uncharacterized protein nan nan
gene-evm.TU.Chr10.434 rna-evm.model.Chr10.434 Chr10 14214406 14217088 PREDICTED: Neurocan core protein nan K10064
gene-evm.TU.Chr10.435 rna-evm.model.Chr10.435 Chr10 14235942 14252427 PREDICTED: Integrin-linked kinase-associated serine/threonine phosphatase 2C GO:0003824;GO:0004722;GO:0006470 K17500
gene-evm.TU.Chr10.436 rna-evm.model.Chr10.436 Chr10 14252461 14286808 PREDICTED: DIS3-like exonuclease 2 GO:0003723;GO:0004540 K18758
gene-evm.TU.Chr10.437 rna-evm.model.Chr10.437 Chr10 14294499 14309766 PREDICTED: Protein immune deficiency GO:0005515;GO:0007165 K20699
gene-evm.TU.Chr10.438 rna-evm.model.Chr10.438 Chr10 14312358 14322672 PREDICTED: Actin nan K10355

For more detailed data, you can explore the Download section to access the full dataset.