CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.401 rna-evm.model.Chr10.401 Chr10 12638128 12640415 uncharacterized protein nan K18601
gene-evm.TU.Chr10.402 rna-evm.model.Chr10.402 Chr10 12644479 12648860 PREDICTED: Sulfotransferase family cytosolic 1B member 1 GO:0008146 K01025
gene-evm.TU.Chr10.403 rna-evm.model.Chr10.403 Chr10 12673877 12675035 uncharacterized protein nan nan
gene-evm.TU.Chr10.404 rna-evm.model.Chr10.404 Chr10 12751245 12755979 PREDICTED: sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) GO:0003676;GO:0004523 nan
gene-evm.TU.Chr10.405 rna-evm.model.Chr10.405 Chr10 12769283 12771585 uncharacterized protein nan K18601
gene-evm.TU.Chr10.406 rna-evm.model.Chr10.406 Chr10 12774262 12778757 PREDICTED: Sulfotransferase family cytosolic 1B member 1 GO:0008146 K01025
gene-evm.TU.Chr10.407 rna-evm.model.Chr10.407 Chr10 12781247 12783644 PREDICTED: Usherin nan K19636
gene-evm.TU.Chr10.409 rna-evm.model.Chr10.409 Chr10 12896489 12904538 uncharacterized protein nan nan
gene-evm.TU.Chr10.41 rna-evm.model.Chr10.41 Chr10 1503587 1504975 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26200
gene-evm.TU.Chr10.410 rna-evm.model.Chr10.410 Chr10 12905497 12905859 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K11364

For more detailed data, you can explore the Download section to access the full dataset.