CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.377 rna-evm.model.Chr10.377 Chr10 12095250 12095996 PREDICTED: L-xylulose reductase nan K03331
gene-evm.TU.Chr10.378 rna-evm.model.Chr10.378 Chr10 12097498 12102088 PREDICTED: 14-3-3 protein beta/alpha-A GO:0019904 K16197
gene-evm.TU.Chr10.379 rna-evm.model.Chr10.379 Chr10 12115050 12121943 uncharacterized protein nan K11244
gene-evm.TU.Chr10.38 rna-evm.model.Chr10.38 Chr10 1291689 1370799 PREDICTED: Nephrin nan K24496
gene-evm.TU.Chr10.380 rna-evm.model.Chr10.380 Chr10 12121881 12143693 PREDICTED: Protein stu1 nan K26029
gene-evm.TU.Chr10.382 rna-evm.model.Chr10.382 Chr10 12166328 12172274 uncharacterized protein nan K10804
gene-evm.TU.Chr10.386 rna-evm.model.Chr10.386 Chr10 12243701 12252746 PREDICTED: Involucrin nan K08451
gene-evm.TU.Chr10.387 rna-evm.model.Chr10.387 Chr10 12256363 12259742 uncharacterized protein nan K24309
gene-evm.TU.Chr10.39 rna-evm.model.Chr10.39 Chr10 1463071 1465566 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K07184
gene-evm.TU.Chr10.390 rna-evm.model.Chr10.390 Chr10 12320212 12321402 PREDICTED: Muscarinic acetylcholine receptor M1 GO:0004930;GO:0007186;GO:0016020 K04151

For more detailed data, you can explore the Download section to access the full dataset.