CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1307 rna-evm.model.Chr1.1307 Chr1 40674626 40675713 PREDICTED: NF-kappa-B inhibitor cactus GO:0005515 K05872
gene-evm.TU.Chr1.1308 rna-evm.model.Chr1.1308 Chr1 40678407 40698024 PREDICTED: Protocadherin Fat 4 GO:0005509;GO:0007156;GO:0016020 K16669
gene-evm.TU.Chr1.1309 rna-evm.model.Chr1.1309 Chr1 40699474 40754155 PREDICTED: Cadherin-related tumor suppressor GO:0005509;GO:0007156;GO:0016020 K16669
gene-evm.TU.Chr1.131 rna-evm.model.Chr1.131.1 Chr1 4299905 4327125 PREDICTED: Sodium channel and clathrin linker 1 GO:0005813;GO:0007098;GO:0045162 K25400
gene-evm.TU.Chr1.1310 rna-evm.model.Chr1.1310 Chr1 40762114 40771384 PREDICTED: collagen, type VI, alpha nan K18032
gene-evm.TU.Chr1.1311 rna-evm.model.Chr1.1311 Chr1 40777649 40844158 PREDICTED: Glutamate receptor 4 GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05199
gene-evm.TU.Chr1.1313 rna-evm.model.Chr1.1313 Chr1 41135823 41166361 PREDICTED: Putative N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase GE19290 GO:0016787 K01444
gene-evm.TU.Chr1.1314_evm.TU.Chr1.1312 rna-evm.model.Chr1.1314_evm.model.Chr1.1312 Chr1 41072746 41181582 PREDICTED: Glutamate receptor GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05200
gene-evm.TU.Chr1.1315 rna-evm.model.Chr1.1315 Chr1 41182740 41207030 PREDICTED: Putative N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase GG24090 GO:0016787 K01444
gene-evm.TU.Chr1.1316 rna-evm.model.Chr1.1316 Chr1 41208227 41216201 PREDICTED: 39S ribosomal protein L22, mitochondrial GO:0003735;GO:0005840;GO:0006412;GO:0015934 K02890

For more detailed data, you can explore the Download section to access the full dataset.