CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1317 rna-evm.model.Chr1.1317 Chr1 41223626 41224900 uncharacterized protein nan nan
gene-evm.TU.Chr1.1323 rna-evm.model.Chr1.1323 Chr1 41510089 41529942 PREDICTED: Protocadherin-16 GO:0005509;GO:0007156;GO:0016020 K16669
gene-evm.TU.Chr1.1324 rna-evm.model.Chr1.1324 Chr1 41536111 41540379 PREDICTED: protein kinase D [EC:2.7.11.13] nan K08051
gene-evm.TU.Chr1.1327 rna-evm.model.Chr1.1327 Chr1 41640794 41654758 PREDICTED: Cadherin EGF LAG seven-pass G-type receptor 2 GO:0005509;GO:0007156;GO:0016020 K16669
gene-evm.TU.Chr1.1328 rna-evm.model.Chr1.1328 Chr1 41663089 41670768 uncharacterized protein nan nan
gene-evm.TU.Chr1.1329 rna-evm.model.Chr1.1329 Chr1 41673766 41704783 PREDICTED: Transient-receptor-potential-like protein GO:0005216;GO:0005262;GO:0005515;GO:0006811;GO:0016020;GO:0055085;GO:0070588 K04967
gene-evm.TU.Chr1.133 rna-evm.model.Chr1.133 Chr1 4344470 4353060 PREDICTED: cap1 methyltransferase [EC:2.1.1.57] nan K06896
gene-evm.TU.Chr1.1330 rna-evm.model.Chr1.1330 Chr1 41796981 41883020 PREDICTED: Rho GTPase-activating protein 10 GO:0005515;GO:0007165 K20071
gene-evm.TU.Chr1.1333 rna-evm.model.Chr1.1333 Chr1 41969280 41978765 uncharacterized protein nan K06826
gene-evm.TU.Chr1.1334 rna-evm.model.Chr1.1334 Chr1 42007532 42034804 PREDICTED: G-protein coupled receptor GRL101 GO:0016020 K04307

For more detailed data, you can explore the Download section to access the full dataset.