CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2269 rna-evm.model.Chr10.2269 Chr10 68881949 68882527 uncharacterized protein nan K11485
gene-evm.TU.Chr10.227 rna-evm.model.Chr10.227 Chr10 7644730 7712023 PREDICTED: Zinc finger protein 362 GO:0003676 K23480
gene-evm.TU.Chr10.2270 rna-evm.model.Chr10.2270 Chr10 69001701 69003159 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr10.2271 rna-evm.model.Chr10.2271 Chr10 69019927 69023583 PREDICTED: Betaine--homocysteine S-methyltransferase 1 nan K00544
gene-evm.TU.Chr10.2272 rna-evm.model.Chr10.2272 Chr10 69040339 69059645 uncharacterized protein nan K10128
gene-evm.TU.Chr10.2276 rna-evm.model.Chr10.2276 Chr10 69079592 69081234 PREDICTED: 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase nan K13485
gene-evm.TU.Chr10.2277 rna-evm.model.Chr10.2277.2 Chr10 69089755 69197395 PREDICTED: Rho guanine nucleotide exchange factor 10 GO:0005085;GO:0035023 K16727
gene-evm.TU.Chr10.2278 rna-evm.model.Chr10.2278 Chr10 69204178 69259329 PREDICTED: Versican core protein GO:0005509 K16681
gene-evm.TU.Chr10.2279 rna-evm.model.Chr10.2279 Chr10 69264695 69279646 PREDICTED: Hemicentin-1 nan K25874
gene-evm.TU.Chr10.228 rna-evm.model.Chr10.228 Chr10 7731517 7731822 PREDICTED: Transcription elongation factor spt5 nan K04266

For more detailed data, you can explore the Download section to access the full dataset.