CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.251 rna-evm.model.Chr10.251 Chr10 8280628 8326064 uncharacterized protein GO:0042981 K04399
gene-evm.TU.Chr10.252 rna-evm.model.Chr10.252 Chr10 8326082 8328544 PREDICTED: titin [EC:2.7.11.1] nan K00341
gene-evm.TU.Chr10.254 rna-evm.model.Chr10.254 Chr10 8334567 8341988 PREDICTED: High affinity cationic amino acid transporter 1 GO:0016020;GO:0022857;GO:0055085 K13866
gene-evm.TU.Chr10.256 rna-evm.model.Chr10.256 Chr10 8367700 8377095 PREDICTED: Triosephosphate isomerase A GO:0004807 K01803
gene-evm.TU.Chr10.257 rna-evm.model.Chr10.257 Chr10 8385907 8414293 PREDICTED: DNA damage-binding protein 2 GO:0003684;GO:0005515;GO:0005634;GO:0006281;GO:0080008 K10140
gene-evm.TU.Chr10.258 rna-evm.model.Chr10.258 Chr10 8415483 8427905 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281;GO:0006508;GO:0008234 K15255
gene-evm.TU.Chr10.259 rna-evm.model.Chr10.259 Chr10 8463279 8586188 PREDICTED: Receptor-type tyrosine-protein phosphatase S GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr10.260 rna-evm.model.Chr10.260 Chr10 8593020 8602160 PREDICTED: Protein enabled homolog GO:0008270 K05746
gene-evm.TU.Chr10.263 rna-evm.model.Chr10.263 Chr10 8790617 8791168 PREDICTED: tachykinin receptor 2 nan K26200
gene-evm.TU.Chr10.264 rna-evm.model.Chr10.264 Chr10 8791347 8792108 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26200

For more detailed data, you can explore the Download section to access the full dataset.