CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2257 rna-evm.model.Chr10.2257 Chr10 68338279 68340018 uncharacterized protein nan nan
gene-evm.TU.Chr10.2259 rna-evm.model.Chr10.2259 Chr10 68351371 68353268 PREDICTED: Bis(5'-adenosyl)-triphosphatase enpp4 GO:0003824 K18398
gene-evm.TU.Chr10.226 rna-evm.model.Chr10.226 Chr10 7636210 7643575 PREDICTED: cell cycle arrest protein BUB3 nan nan
gene-evm.TU.Chr10.2260 rna-evm.model.Chr10.2260 Chr10 68414809 68416621 uncharacterized protein nan nan
gene-evm.TU.Chr10.2261 rna-evm.model.Chr10.2261 Chr10 68457223 68467670 PREDICTED: THAP domain-containing protein 7 GO:0003676 K23204
gene-evm.TU.Chr10.2262 rna-evm.model.Chr10.2262 Chr10 68469580 68470488 PREDICTED: inner nuclear membrane protein Man1 nan K21233
gene-evm.TU.Chr10.2264 rna-evm.model.Chr10.2264 Chr10 68595576 68621490 PREDICTED: High affinity cationic amino acid transporter 1 GO:0016020;GO:0022857;GO:0055085 K13865
gene-evm.TU.Chr10.2265 rna-evm.model.Chr10.2265 Chr10 68779243 68782903 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676;GO:0003677 K22594
gene-evm.TU.Chr10.2267 rna-evm.model.Chr10.2267 Chr10 68880276 68881025 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K16365
gene-evm.TU.Chr10.2268 rna-evm.model.Chr10.2268 Chr10 68881052 68881867 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K13246

For more detailed data, you can explore the Download section to access the full dataset.