CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.241 rna-evm.model.Chr10.241 Chr10 8037343 8058998 PREDICTED: ankyrin repeat domain-containing protein 50 nan K08757
gene-evm.TU.Chr10.242 rna-evm.model.Chr10.242 Chr10 8061597 8083511 PREDICTED: C-type mannose receptor 2 nan K06560
gene-evm.TU.Chr10.243 rna-evm.model.Chr10.243 Chr10 8086594 8101993 uncharacterized protein GO:0004518 K04799
gene-evm.TU.Chr10.244 rna-evm.model.Chr10.244 Chr10 8102032 8114587 PREDICTED: Acetyl-coenzyme A transporter 1 GO:0008521;GO:0016020;GO:0016020 K03372
gene-evm.TU.Chr10.245 rna-evm.model.Chr10.245 Chr10 8139365 8144453 PREDICTED: Ankyrin repeat and SOCS box protein 7 GO:0005515 K21411
gene-evm.TU.Chr10.246 rna-evm.model.Chr10.246 Chr10 8146584 8171265 PREDICTED: CTD nuclear envelope phosphatase 1 nan K17617
gene-evm.TU.Chr10.247 rna-evm.model.Chr10.247 Chr10 8179965 8201751 PREDICTED: Cleavage stimulation factor subunit 1 GO:0005515 K14406
gene-evm.TU.Chr10.248 rna-evm.model.Chr10.248 Chr10 8201787 8217915 PREDICTED: Signal peptidase complex subunit 1 GO:0005787;GO:0006465;GO:0008233;GO:0016020 K12946
gene-evm.TU.Chr10.249 rna-evm.model.Chr10.249 Chr10 8228176 8254695 PREDICTED: Perlucin-like protein nan K10064
gene-evm.TU.Chr10.250 rna-evm.model.Chr10.250 Chr10 8270070 8280555 PREDICTED: EF-hand domain-containing protein D2 GO:0005509 K23922

For more detailed data, you can explore the Download section to access the full dataset.