CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2298 rna-evm.model.Chr10.2298 Chr10 69662816 69663418 PREDICTED: elongation factor Ts nan K10790
gene-evm.TU.Chr10.23 rna-evm.model.Chr10.23 Chr10 659039 659894 PREDICTED: dual specificity phosphatase 12 [EC:3.1.3.16 3.1.3.48] nan K10804
gene-evm.TU.Chr10.230 rna-evm.model.Chr10.230 Chr10 7757412 7760811 PREDICTED: periphilin-1 nan K00276
gene-evm.TU.Chr10.2302 rna-evm.model.Chr10.2302 Chr10 69808311 69810769 uncharacterized protein nan nan
gene-evm.TU.Chr10.231 rna-evm.model.Chr10.231 Chr10 7809675 7847393 PREDICTED: E3 ubiquitin-protein ligase TRAIP nan K11985
gene-evm.TU.Chr10.232_evm.TU.Chr10.233 rna-evm.model.Chr10.232_evm.model.Chr10.233 Chr10 7854024 7916267 PREDICTED: DNA-directed RNA polymerase, mitochondrial GO:0003677;GO:0003899;GO:0006351 K10908
gene-evm.TU.Chr10.234 rna-evm.model.Chr10.234 Chr10 7919932 7956598 uncharacterized protein nan K06954
gene-evm.TU.Chr10.236 rna-evm.model.Chr10.236 Chr10 7960953 7961246 PREDICTED: putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr10.238 rna-evm.model.Chr10.238 Chr10 7971904 7992446 PREDICTED: E3 ubiquitin-protein ligase MIB2 GO:0003950;GO:0004842;GO:0005515;GO:0008270;GO:0016567;GO:0046872 K10645
gene-evm.TU.Chr10.240 rna-evm.model.Chr10.240 Chr10 8000620 8015069 PREDICTED: E3 ubiquitin-protein ligase MIB2 GO:0003950;GO:0004842;GO:0005515;GO:0008270;GO:0016567;GO:0046872 K10645

For more detailed data, you can explore the Download section to access the full dataset.