CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2243 rna-evm.model.Chr10.2243 Chr10 68155583 68159038 uncharacterized protein nan K01142
gene-evm.TU.Chr10.2245 rna-evm.model.Chr10.2245 Chr10 68175827 68179552 PREDICTED: G-protein coupled receptor 157 GO:0004888;GO:0007166;GO:0016020 K08467
gene-evm.TU.Chr10.2246 rna-evm.model.Chr10.2246 Chr10 68186551 68193848 PREDICTED: G-protein coupled receptor 157 GO:0004888;GO:0007166;GO:0016020 K08467
gene-evm.TU.Chr10.2248 rna-evm.model.Chr10.2248 Chr10 68197268 68200554 PREDICTED: G-protein coupled receptor 157 nan K08467
gene-evm.TU.Chr10.2249 rna-evm.model.Chr10.2249 Chr10 68206759 68216081 PREDICTED: G-protein coupled receptor 157 GO:0004888;GO:0007166;GO:0016020 K08467
gene-evm.TU.Chr10.225 rna-evm.model.Chr10.225 Chr10 7600435 7626049 PREDICTED: Prostamide/prostaglandin F synthase GO:0055114 K15717
gene-evm.TU.Chr10.2250 rna-evm.model.Chr10.2250 Chr10 68225792 68246793 PREDICTED: Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial GO:0005515;GO:0016491;GO:0055114 K00294
gene-evm.TU.Chr10.2251 rna-evm.model.Chr10.2251 Chr10 68251214 68264755 PREDICTED: Macrophage mannose receptor 1 nan K06560
gene-evm.TU.Chr10.2253 rna-evm.model.Chr10.2253 Chr10 68280841 68286512 PREDICTED: Neurocan core protein nan K22244
gene-evm.TU.Chr10.2256_evm.TU.Chr10.2254 rna-evm.model.Chr10.2256_evm.model.Chr10.2254 Chr10 68288886 68329149 PREDICTED: Cationic amino acid transporter 2 GO:0016020;GO:0022857;GO:0055085 K13865

For more detailed data, you can explore the Download section to access the full dataset.