CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2212 rna-evm.model.Chr10.2212 Chr10 67365912 67383010 PREDICTED: Protein brambleberry nan K22804
gene-evm.TU.Chr10.2213 rna-evm.model.Chr10.2213 Chr10 67387507 67397881 PREDICTED: 4-hydroxybutyrate coenzyme A transferase GO:0003824;GO:0006084 K18122
gene-evm.TU.Chr10.2214 rna-evm.model.Chr10.2214 Chr10 67398080 67405898 PREDICTED: 4-hydroxybutyrate coenzyme A transferase GO:0003824;GO:0006084 K18122
gene-evm.TU.Chr10.2215 rna-evm.model.Chr10.2215 Chr10 67415249 67439630 PREDICTED: Neprilysin-1 GO:0004222;GO:0006508 K08635
gene-evm.TU.Chr10.2216 rna-evm.model.Chr10.2216 Chr10 67436433 67437490 PREDICTED: Cathelicidin-B1 nan K08127
gene-evm.TU.Chr10.2218 rna-evm.model.Chr10.2218 Chr10 67492755 67495399 PREDICTED: Tripartite motif-containing protein 2 GO:0005515 K11997
gene-evm.TU.Chr10.222 rna-evm.model.Chr10.222 Chr10 7488657 7497050 PREDICTED: Cysteine proteinase 1 GO:0006508;GO:0008234 K01373
gene-evm.TU.Chr10.2221 rna-evm.model.Chr10.2221 Chr10 67546948 67548549 uncharacterized protein nan K05230
gene-evm.TU.Chr10.2222 rna-evm.model.Chr10.2222 Chr10 67556818 67557483 PREDICTED: C-type lectin lectoxin-Thr1 nan K25727
gene-evm.TU.Chr10.2225 rna-evm.model.Chr10.2225 Chr10 67569603 67570259 uncharacterized protein nan K03196

For more detailed data, you can explore the Download section to access the full dataset.