CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2200 rna-evm.model.Chr10.2200 Chr10 67125847 67134049 PREDICTED: Synaptotagmin-1 nan K19902
gene-evm.TU.Chr10.2201 rna-evm.model.Chr10.2201 Chr10 67139580 67142196 PREDICTED: 3-[(3aS,4S,7aS)-7a-methyl-1, 5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase GO:0003824 K23617
gene-evm.TU.Chr10.2202 rna-evm.model.Chr10.2202 Chr10 67171363 67172762 PREDICTED: Zinc transporter ZIP1 GO:0016020;GO:0030001;GO:0046873;GO:0055085 K14709
gene-evm.TU.Chr10.2203 rna-evm.model.Chr10.2203 Chr10 67187119 67198554 PREDICTED: Zinc finger protein with KRAB and SCAN domains 5 GO:0003676 K09230
gene-evm.TU.Chr10.2205 rna-evm.model.Chr10.2205 Chr10 67213368 67246248 PREDICTED: Polyhomeotic-proximal chromatin protein GO:0005515 K11456
gene-evm.TU.Chr10.2206 rna-evm.model.Chr10.2206 Chr10 67249176 67252583 PREDICTED: Endoglucanase nan nan
gene-evm.TU.Chr10.2208 rna-evm.model.Chr10.2208 Chr10 67260602 67265130 PREDICTED: 2-phosphoxylose phosphatase 1 nan K21403
gene-evm.TU.Chr10.2209 rna-evm.model.Chr10.2209 Chr10 67288655 67297048 PREDICTED: Nuclear envelope pore membrane protein POM 121 nan K14316
gene-evm.TU.Chr10.221 rna-evm.model.Chr10.221 Chr10 7482673 7484443 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676;GO:0003677 K11496
gene-evm.TU.Chr10.2210 rna-evm.model.Chr10.2210 Chr10 67302396 67337868 PREDICTED: Condensin complex subunit 1 GO:0000278;GO:0005634;GO:0007076;GO:0030261 K06677

For more detailed data, you can explore the Download section to access the full dataset.