CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2188 rna-evm.model.Chr10.2188 Chr10 66629892 66639620 PREDICTED: Probable G-protein coupled receptor Mth-like 3 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K04599
gene-evm.TU.Chr10.2189 rna-evm.model.Chr10.2189 Chr10 66654181 66665856 PREDICTED: Cytosolic iron-sulfur assembly component 3 GO:0003824;GO:0005515;GO:0006518;GO:0016020 K26404
gene-evm.TU.Chr10.219 rna-evm.model.Chr10.219 Chr10 7439711 7448116 PREDICTED: Neurocan core protein nan K06468
gene-evm.TU.Chr10.2191 rna-evm.model.Chr10.2191 Chr10 66683576 66684271 uncharacterized protein nan nan
gene-evm.TU.Chr10.2192 rna-evm.model.Chr10.2192 Chr10 66684536 66719805 PREDICTED: Ventricular zone-expressed PH domain-containing protein 1 nan K24027
gene-evm.TU.Chr10.2196 rna-evm.model.Chr10.2196 Chr10 66963066 67006194 PREDICTED: LisH domain-containing protein ARMC9 GO:0036064;GO:0060271 K22864
gene-evm.TU.Chr10.2198 rna-evm.model.Chr10.2198 Chr10 67072252 67094064 PREDICTED: Phosphatidylinositol N-acetylglucosaminyltransferase subunit A GO:0006506 K03857
gene-evm.TU.Chr10.2199 rna-evm.model.Chr10.2199 Chr10 67107732 67109090 PREDICTED: protocadherin-15 GO:0046872 nan
gene-evm.TU.Chr10.22 rna-evm.model.Chr10.22 Chr10 657770 658264 PREDICTED: vomeronasal 2 receptor GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr10.220 rna-evm.model.Chr10.220 Chr10 7473313 7479474 PREDICTED: Neurocan core protein nan K10059

For more detailed data, you can explore the Download section to access the full dataset.