CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2176 rna-evm.model.Chr10.2176 Chr10 66063015 66064543 PREDICTED: Dopamine D2-like receptor GO:0004930;GO:0007186;GO:0016020 K04214
gene-evm.TU.Chr10.2178 rna-evm.model.Chr10.2178 Chr10 66302888 66315862 PREDICTED: Adaptin ear-binding coat-associated protein 1 GO:0006897;GO:0016020 K20069
gene-evm.TU.Chr10.2179 rna-evm.model.Chr10.2179 Chr10 66319621 66370328 PREDICTED: Tripartite motif-containing protein 2 GO:0005515;GO:0008270 K11997
gene-evm.TU.Chr10.218 rna-evm.model.Chr10.218 Chr10 7392015 7404539 uncharacterized protein nan nan
gene-evm.TU.Chr10.2180 rna-evm.model.Chr10.2180 Chr10 66381194 66395397 PREDICTED: NACHT and WD repeat domain-containing protein 2 nan K24734
gene-evm.TU.Chr10.2181 rna-evm.model.Chr10.2181 Chr10 66398819 66412620 PREDICTED: Nucleoside diphosphate-linked moiety X motif 8 GO:0016787 K18665
gene-evm.TU.Chr10.2182 rna-evm.model.Chr10.2182 Chr10 66423350 66456600 PREDICTED: Sacsin nan K17592
gene-evm.TU.Chr10.2183 rna-evm.model.Chr10.2183 Chr10 66482473 66492724 PREDICTED: Potassium voltage-gated channel subfamily A member 2 GO:0005216;GO:0005249;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04887
gene-evm.TU.Chr10.2184 rna-evm.model.Chr10.2184 Chr10 66508729 66509223 PREDICTED: Potassium voltage-gated channel protein Shaw GO:0005249;GO:0006813;GO:0008076;GO:0051260 K04890
gene-evm.TU.Chr10.2187 rna-evm.model.Chr10.2187 Chr10 66611706 66623373 PREDICTED: Probable G-protein coupled receptor Mth-like 3 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K04599

For more detailed data, you can explore the Download section to access the full dataset.