CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1297 rna-evm.model.Chr1.1297 Chr1 40321662 40336988 PREDICTED: Myotubularin-related protein 2 nan K18081
gene-evm.TU.Chr1.1298 rna-evm.model.Chr1.1298 Chr1 40344495 40358369 PREDICTED: Ankyrin repeat and LEM domain-containing protein 2 GO:0005515;GO:0007084;GO:0035307;GO:0051721 K21412
gene-evm.TU.Chr1.1299 rna-evm.model.Chr1.1299 Chr1 40358478 40376484 PREDICTED: Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 GO:0008138;GO:0016311 K18079
gene-evm.TU.Chr1.13 rna-evm.model.Chr1.13 Chr1 553643 569456 uncharacterized protein nan nan
gene-evm.TU.Chr1.130 rna-evm.model.Chr1.130 Chr1 4273655 4275102 PREDICTED: Kappa-type opioid receptor GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr1.1300 rna-evm.model.Chr1.1300 Chr1 40380437 40383461 PREDICTED: E3 ubiquitin-protein ligase TRIM71 GO:0008270 K12026
gene-evm.TU.Chr1.1301 rna-evm.model.Chr1.1301 Chr1 40456735 40478899 PREDICTED: Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 GO:0008138;GO:0016311 K18079
gene-evm.TU.Chr1.1302 rna-evm.model.Chr1.1302 Chr1 40497237 40521657 uncharacterized protein nan nan
gene-evm.TU.Chr1.1303 rna-evm.model.Chr1.1303 Chr1 40557707 40593457 PREDICTED: Phosphoglucomutase-2 GO:0005975;GO:0016868;GO:0071704 K15779
gene-evm.TU.Chr1.1305 rna-evm.model.Chr1.1305 Chr1 40637583 40645380 uncharacterized protein nan K16507

For more detailed data, you can explore the Download section to access the full dataset.