CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2157 rna-evm.model.Chr10.2157 Chr10 65306162 65335844 PREDICTED: Contactin GO:0005515 K06760
gene-evm.TU.Chr10.2159 rna-evm.model.Chr10.2159 Chr10 65381023 65399890 uncharacterized protein nan K16763
gene-evm.TU.Chr10.2163 rna-evm.model.Chr10.2163 Chr10 65482035 65482637 uncharacterized protein nan nan
gene-evm.TU.Chr10.2164 rna-evm.model.Chr10.2164 Chr10 65482701 65482853 uncharacterized protein nan nan
gene-evm.TU.Chr10.2168 rna-evm.model.Chr10.2168 Chr10 65626790 65635966 PREDICTED: Tenascin-X nan K24068
gene-evm.TU.Chr10.2169 rna-evm.model.Chr10.2169 Chr10 65698212 65698706 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan nan
gene-evm.TU.Chr10.217 rna-evm.model.Chr10.217 Chr10 7318370 7336270 PREDICTED: Nose resistant to fluoxetine protein 6 GO:0016747 K16568
gene-evm.TU.Chr10.2171 rna-evm.model.Chr10.2171 Chr10 65762764 65766379 PREDICTED: Cytoglobin-1 GO:0020037 K21893
gene-evm.TU.Chr10.2172 rna-evm.model.Chr10.2172 Chr10 65803745 65813584 PREDICTED: Neuroglobin GO:0020037 K21893
gene-evm.TU.Chr10.2175 rna-evm.model.Chr10.2175 Chr10 66015663 66066195 PREDICTED: Neuropeptide SIFamide receptor GO:0004930;GO:0007186;GO:0016020 K04231

For more detailed data, you can explore the Download section to access the full dataset.