CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2130 rna-evm.model.Chr10.2130 Chr10 64806918 64808494 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K06679
gene-evm.TU.Chr10.2131 rna-evm.model.Chr10.2131 Chr10 64820979 64842659 PREDICTED: Metabotropic glutamate receptor GO:0004930;GO:0007186;GO:0016020 K04611
gene-evm.TU.Chr10.2132 rna-evm.model.Chr10.2132 Chr10 64943229 64943516 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr10.2133 rna-evm.model.Chr10.2133 Chr10 64951922 64952701 PREDICTED: myotubularin-related protein 10/11/12 GO:0003676;GO:0004523 K03843
gene-evm.TU.Chr10.2134 rna-evm.model.Chr10.2134 Chr10 64952704 64953150 PREDICTED: ATP-dependent RNA helicase DDX58 [EC:3.6.4.13] nan nan
gene-evm.TU.Chr10.2137 rna-evm.model.Chr10.2137 Chr10 64965608 64968730 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr10.2138 rna-evm.model.Chr10.2138 Chr10 64978133 64979131 uncharacterized protein nan nan
gene-evm.TU.Chr10.2139 rna-evm.model.Chr10.2139 Chr10 64980175 64981199 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr10.214 rna-evm.model.Chr10.214 Chr10 7225563 7230060 PREDICTED: caspase 9 [EC:3.4.22.62] GO:0042981 K04399
gene-evm.TU.Chr10.2140 rna-evm.model.Chr10.2140 Chr10 64982319 64983357 PREDICTED: complement component 4 nan K06286

For more detailed data, you can explore the Download section to access the full dataset.