CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2110 rna-evm.model.Chr10.2110 Chr10 64379725 64380889 PREDICTED: N-acetyltransferase MPR1 nan K22842
gene-evm.TU.Chr10.2113 rna-evm.model.Chr10.2113 Chr10 64391040 64392188 PREDICTED: N-acetyltransferase aca1 nan K22842
gene-evm.TU.Chr10.2115 rna-evm.model.Chr10.2115 Chr10 64412088 64414937 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr10.212 rna-evm.model.Chr10.212 Chr10 7192562 7201194 uncharacterized protein nan K20342
gene-evm.TU.Chr10.2120 rna-evm.model.Chr10.2120 Chr10 64577790 64578870 uncharacterized protein nan K09205
gene-evm.TU.Chr10.2121 rna-evm.model.Chr10.2121 Chr10 64579570 64580745 PREDICTED: ATP-binding protein nan K03753
gene-evm.TU.Chr10.2126 rna-evm.model.Chr10.2126 Chr10 64589835 64591755 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr10.2128 rna-evm.model.Chr10.2128 Chr10 64617580 64617832 uncharacterized protein nan K07499
gene-evm.TU.Chr10.2129 rna-evm.model.Chr10.2129 Chr10 64766432 64767912 PREDICTED: Neuropeptide SIFamide receptor GO:0004930;GO:0007186;GO:0016020 K04231
gene-evm.TU.Chr10.213 rna-evm.model.Chr10.213 Chr10 7208674 7220122 PREDICTED: High affinity cationic amino acid transporter 1 GO:0016020;GO:0022857;GO:0055085 K13866

For more detailed data, you can explore the Download section to access the full dataset.