CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2090 rna-evm.model.Chr10.2090 Chr10 63848807 63869691 PREDICTED: Potassium voltage-gated channel protein Shaw GO:0005216;GO:0005249;GO:0005515;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04887
gene-evm.TU.Chr10.2091 rna-evm.model.Chr10.2091 Chr10 63872305 63878661 PREDICTED: Inactive C-alpha-formylglycine-generating enzyme 2 nan K13444
gene-evm.TU.Chr10.2092 rna-evm.model.Chr10.2092 Chr10 63883086 63884327 PREDICTED: C-C chemokine receptor type 3 GO:0016020 K08428
gene-evm.TU.Chr10.2093 rna-evm.model.Chr10.2093 Chr10 63884932 63887316 PREDICTED: B-cell lymphoma 6 protein homolog GO:0003676 K24807
gene-evm.TU.Chr10.2094 rna-evm.model.Chr10.2094 Chr10 63891900 63899360 PREDICTED: Putative defense protein 3 nan K24427
gene-evm.TU.Chr10.2095 rna-evm.model.Chr10.2095 Chr10 63905073 64014757 PREDICTED: Peroxisomal targeting signal 1 receptor GO:0005515 K13342
gene-evm.TU.Chr10.2096 rna-evm.model.Chr10.2096 Chr10 64018796 64034515 PREDICTED: Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta GO:0004114;GO:0050953 K13758
gene-evm.TU.Chr10.2097 rna-evm.model.Chr10.2097 Chr10 64044564 64057091 PREDICTED: Protein C3orf33 nan K17081
gene-evm.TU.Chr10.2098 rna-evm.model.Chr10.2098 Chr10 64083926 64126704 PREDICTED: Neprilysin-1 GO:0004222;GO:0006508 K08635
gene-evm.TU.Chr10.2099 rna-evm.model.Chr10.2099 Chr10 64126718 64136324 PREDICTED: Neprilysin-1 GO:0004222;GO:0006508 K08635

For more detailed data, you can explore the Download section to access the full dataset.