CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2072 rna-evm.model.Chr10.2072 Chr10 63404610 63405722 PREDICTED: Leucine-rich repeats and immunoglobulin-like domains protein 3 GO:0005515 K17256
gene-evm.TU.Chr10.2074 rna-evm.model.Chr10.2074 Chr10 63428608 63431759 PREDICTED: Leucine-rich repeat-containing G-protein coupled receptor 4 GO:0005515 K08399
gene-evm.TU.Chr10.2075_evm.TU.Chr10.2076 rna-evm.model.Chr10.2075_evm.model.Chr10.2076 Chr10 63434787 63475199 PREDICTED: Alkaline phosphatase, tissue-nonspecific isozyme GO:0016791 K01077
gene-evm.TU.Chr10.2079 rna-evm.model.Chr10.2079 Chr10 63536080 63601063 PREDICTED: Endothelin-converting enzyme homolog GO:0004222;GO:0006508 K01415
gene-evm.TU.Chr10.2080 rna-evm.model.Chr10.2080 Chr10 63605698 63670037 PREDICTED: 5'-3' exoribonuclease 1 GO:0000956;GO:0003676;GO:0004527;GO:0008409 K12618
gene-evm.TU.Chr10.2082 rna-evm.model.Chr10.2082 Chr10 63675948 63687494 uncharacterized protein nan K24848
gene-evm.TU.Chr10.2084 rna-evm.model.Chr10.2084 Chr10 63695225 63700035 PREDICTED: Phospholipid scramblase 1 GO:0017121;GO:0017128 nan
gene-evm.TU.Chr10.2085 rna-evm.model.Chr10.2085 Chr10 63727669 63758720 PREDICTED: Nephrin nan K16680
gene-evm.TU.Chr10.2089 rna-evm.model.Chr10.2089 Chr10 63827713 63845144 PREDICTED: Putative ferric-chelate reductase 1 nan K07604
gene-evm.TU.Chr10.209 rna-evm.model.Chr10.209 Chr10 7123111 7128353 PREDICTED: Multiple epidermal growth factor-like domains protein 10 nan K24068

For more detailed data, you can explore the Download section to access the full dataset.