CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2060 rna-evm.model.Chr10.2060.4 Chr10 62971572 62999658 PREDICTED: Tumor necrosis factor receptor superfamily member 5 nan K03160
gene-evm.TU.Chr10.2062 rna-evm.model.Chr10.2062 Chr10 63008482 63054328 PREDICTED: Neprilysin-1 GO:0004222;GO:0006508 K08635
gene-evm.TU.Chr10.2064 rna-evm.model.Chr10.2064 Chr10 63082338 63126681 PREDICTED: Protein dispatched homolog 3 GO:0016020;GO:0016020 K24683
gene-evm.TU.Chr10.2065 rna-evm.model.Chr10.2065 Chr10 63136178 63171295 PREDICTED: Putative serine/threonine-protein kinase/receptor R818 GO:0004672;GO:0004713;GO:0005524;GO:0006468 K04427
gene-evm.TU.Chr10.2066 rna-evm.model.Chr10.2066 Chr10 63176371 63194127 PREDICTED: YEATS domain-containing protein 4 GO:0006355 K11341
gene-evm.TU.Chr10.2067 rna-evm.model.Chr10.2067 Chr10 63194392 63200443 PREDICTED: Urease accessory protein F GO:0006807;GO:0016151 K03188
gene-evm.TU.Chr10.2068 rna-evm.model.Chr10.2068 Chr10 63202178 63203551 PREDICTED: Diamine acetyltransferase 2 nan K00657
gene-evm.TU.Chr10.2069 rna-evm.model.Chr10.2069 Chr10 63205403 63208273 PREDICTED: Diamine acetyltransferase 2 nan K00657
gene-evm.TU.Chr10.2070 rna-evm.model.Chr10.2070 Chr10 63239871 63350292 PREDICTED: Neprilysin-1 GO:0004222;GO:0006508 K08635
gene-evm.TU.Chr10.2071 rna-evm.model.Chr10.2071 Chr10 63362761 63389031 PREDICTED: Leucine-rich repeat-containing G-protein coupled receptor 6 GO:0005515 K08399

For more detailed data, you can explore the Download section to access the full dataset.