CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2049 rna-evm.model.Chr10.2049 Chr10 62494859 62504302 PREDICTED: Myeloid leukemia factor 1 nan K15622
gene-evm.TU.Chr10.205 rna-evm.model.Chr10.205 Chr10 7012019 7016011 PREDICTED: Tyrosine-protein phosphatase Lar GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr10.2050 rna-evm.model.Chr10.2050 Chr10 62510199 62511547 PREDICTED: P2Y purinoceptor 8 nan K10184
gene-evm.TU.Chr10.2052 rna-evm.model.Chr10.2052.1 Chr10 62523497 62568316 PREDICTED: Paired box protein Pax-2 GO:0003677;GO:0006355 K09383
gene-evm.TU.Chr10.2054 rna-evm.model.Chr10.2054 Chr10 62578207 62589037 PREDICTED: Urease accessory protein D GO:0006807;GO:0016151 K03190
gene-evm.TU.Chr10.2055 rna-evm.model.Chr10.2055 Chr10 62614004 62625133 PREDICTED: Zinc finger MYND domain-containing protein 12 GO:0005515 K19360
gene-evm.TU.Chr10.2056 rna-evm.model.Chr10.2056.2 Chr10 62636330 62708665 PREDICTED: Major antigen nan K20282
gene-evm.TU.Chr10.2057 rna-evm.model.Chr10.2057 Chr10 62712776 62714720 uncharacterized protein nan nan
gene-evm.TU.Chr10.2058 rna-evm.model.Chr10.2058 Chr10 62727407 62784667 PREDICTED: ATP-binding cassette sub-family F member 3 GO:0005524;GO:0016887 K06158
gene-evm.TU.Chr10.2059 rna-evm.model.Chr10.2059 Chr10 62816711 62841914 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026

For more detailed data, you can explore the Download section to access the full dataset.