CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2023 rna-evm.model.Chr10.2023 Chr10 61915888 61916235 uncharacterized protein nan nan
gene-evm.TU.Chr10.2024 rna-evm.model.Chr10.2024 Chr10 61935984 61965341 PREDICTED: Neprilysin-1 GO:0004222;GO:0006508 K08635
gene-evm.TU.Chr10.2025 rna-evm.model.Chr10.2025 Chr10 61968525 61976786 PREDICTED: SH3 domain-binding glutamic acid-rich-like protein 3 nan K23740
gene-evm.TU.Chr10.2026 rna-evm.model.Chr10.2026 Chr10 61979470 61991289 PREDICTED: Tumor protein p63-regulated gene 1-like protein nan K21798
gene-evm.TU.Chr10.2027 rna-evm.model.Chr10.2027 Chr10 62008929 62014732 PREDICTED: Potassium voltage-gated channel subfamily B member 2 GO:0005216;GO:0005249;GO:0005515;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04890
gene-evm.TU.Chr10.2029 rna-evm.model.Chr10.2029 Chr10 62019807 62026844 uncharacterized protein nan K24496
gene-evm.TU.Chr10.2030 rna-evm.model.Chr10.2030 Chr10 62034232 62037044 PREDICTED: Tripartite motif-containing protein 2 GO:0005515 K11997
gene-evm.TU.Chr10.2031 rna-evm.model.Chr10.2031 Chr10 62060782 62073768 PREDICTED: Tripartite motif-containing protein 2 GO:0005515 K11997
gene-evm.TU.Chr10.2034 rna-evm.model.Chr10.2034 Chr10 62093111 62097635 PREDICTED: Sacsin nan K17592
gene-evm.TU.Chr10.2035 rna-evm.model.Chr10.2035 Chr10 62106565 62130367 PREDICTED: Sacsin nan K17592

For more detailed data, you can explore the Download section to access the full dataset.