CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2010 rna-evm.model.Chr10.2010 Chr10 61559232 61571642 PREDICTED: UBX domain-containing protein 10 GO:0005515 K24352
gene-evm.TU.Chr10.2011 rna-evm.model.Chr10.2011 Chr10 61594365 61613463 PREDICTED: Fibropellin-1 GO:0005509 K16681
gene-evm.TU.Chr10.2012_evm.TU.Chr10.2013 rna-evm.model.Chr10.2012_evm.model.Chr10.2013 Chr10 61621414 61682682 PREDICTED: Rho guanine nucleotide exchange factor 10 GO:0005085 K16727
gene-evm.TU.Chr10.2014 rna-evm.model.Chr10.2014 Chr10 61686030 61687848 uncharacterized protein nan nan
gene-evm.TU.Chr10.2015 rna-evm.model.Chr10.2015 Chr10 61720261 61722477 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K22768
gene-evm.TU.Chr10.2016 rna-evm.model.Chr10.2016 Chr10 61762387 61762773 PREDICTED: Putative apoptosis inhibitor ORF99 nan K04725
gene-evm.TU.Chr10.2019 rna-evm.model.Chr10.2019 Chr10 61785967 61825195 PREDICTED: Protein Wnt-4 GO:0005102;GO:0005576;GO:0007275;GO:0016055 K00408
gene-evm.TU.Chr10.202 rna-evm.model.Chr10.202 Chr10 6893653 6895970 PREDICTED: Putative ferric-chelate reductase 1 nan K24427
gene-evm.TU.Chr10.2020 rna-evm.model.Chr10.2020 Chr10 61827093 61828970 uncharacterized protein nan K15137
gene-evm.TU.Chr10.2021 rna-evm.model.Chr10.2021 Chr10 61840393 61849610 PREDICTED: anaphase-promoting complex subunit 5 nan K19018

For more detailed data, you can explore the Download section to access the full dataset.