CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.2001 rna-evm.model.Chr10.2001 Chr10 61230733 61238742 PREDICTED: Neurocan core protein nan K10059
gene-evm.TU.Chr10.2002 rna-evm.model.Chr10.2002 Chr10 61238749 61239255 PREDICTED: trichohyalin nan K20394
gene-evm.TU.Chr10.2003 rna-evm.model.Chr10.2003 Chr10 61240141 61256206 uncharacterized protein nan K22132
gene-evm.TU.Chr10.2004 rna-evm.model.Chr10.2004 Chr10 61393466 61407225 PREDICTED: D-glucuronyl C5-epimerase GO:0015012;GO:0047464 K01793
gene-evm.TU.Chr10.2005 rna-evm.model.Chr10.2005 Chr10 61441690 61442076 PREDICTED: Putative apoptosis inhibitor ORF99 nan K04725
gene-evm.TU.Chr10.2006 rna-evm.model.Chr10.2006 Chr10 61464818 61491082 PREDICTED: Sacsin nan K17592
gene-evm.TU.Chr10.2007 rna-evm.model.Chr10.2007 Chr10 61491587 61501113 PREDICTED: Sacsin nan K17592
gene-evm.TU.Chr10.2008 rna-evm.model.Chr10.2008 Chr10 61515336 61526112 uncharacterized protein nan K25459
gene-evm.TU.Chr10.2009 rna-evm.model.Chr10.2009 Chr10 61531352 61559051 PREDICTED: Elongator complex protein 5 GO:0002098;GO:0033588 K11376
gene-evm.TU.Chr10.201 rna-evm.model.Chr10.201 Chr10 6873221 6883255 PREDICTED: Glycosyltransferase 8 domain-containing protein 1 GO:0016757 K20867

For more detailed data, you can explore the Download section to access the full dataset.