CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1992 rna-evm.model.Chr10.1992 Chr10 60993254 61025055 PREDICTED: Exosome component 10 GO:0000176;GO:0003676;GO:0005515;GO:0006139;GO:0006396;GO:0008408 K12591
gene-evm.TU.Chr10.1993 rna-evm.model.Chr10.1993 Chr10 61031683 61036266 uncharacterized protein nan K06820
gene-evm.TU.Chr10.1994 rna-evm.model.Chr10.1994 Chr10 61045612 61056641 PREDICTED: Plexin-2 GO:0017154;GO:0071526 K06820
gene-evm.TU.Chr10.1996 rna-evm.model.Chr10.1996 Chr10 61098400 61101565 PREDICTED: Pleckstrin homology domain-containing family B member 2 GO:0016020 K23857
gene-evm.TU.Chr10.1997 rna-evm.model.Chr10.1997 Chr10 61106837 61110280 PREDICTED: Tetratricopeptide repeat protein 36 GO:0005515 K24941
gene-evm.TU.Chr10.1998 rna-evm.model.Chr10.1998 Chr10 61140148 61146870 PREDICTED: SUZ domain-containing protein 1 nan K18733
gene-evm.TU.Chr10.2 rna-evm.model.Chr10.2 Chr10 104816 106908 uncharacterized protein nan K24731
gene-evm.TU.Chr10.20 rna-evm.model.Chr10.20 Chr10 656829 657389 PREDICTED: myotubularin-related protein 10/11/12 nan nan
gene-evm.TU.Chr10.200 rna-evm.model.Chr10.200 Chr10 6854453 6873073 PREDICTED: Ferrochelatase, mitochondrial GO:0004325;GO:0006783 K01772
gene-evm.TU.Chr10.2000 rna-evm.model.Chr10.2000.1 Chr10 61163816 61207791 PREDICTED: Probable cation-transporting ATPase 13A3 GO:0006812;GO:0016020;GO:0016887 K14951

For more detailed data, you can explore the Download section to access the full dataset.