CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.197 rna-evm.model.Chr10.197 Chr10 6829019 6833382 PREDICTED: Acetylcholine receptor subunit delta GO:0004888;GO:0005216;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr10.1971 rna-evm.model.Chr10.1971 Chr10 60591089 60592692 PREDICTED: Apolipoprotein A-I nan K08757
gene-evm.TU.Chr10.1972 rna-evm.model.Chr10.1972 Chr10 60593047 60595667 uncharacterized protein nan K00477
gene-evm.TU.Chr10.1973 rna-evm.model.Chr10.1973 Chr10 60598659 60604172 uncharacterized protein nan K25151
gene-evm.TU.Chr10.1974 rna-evm.model.Chr10.1974 Chr10 60610384 60619819 PREDICTED: Glyceraldehyde-3-phosphate dehydrogenase GO:0016620;GO:0055114 K00134
gene-evm.TU.Chr10.1975 rna-evm.model.Chr10.1975 Chr10 60624849 60638778 PREDICTED: Coiled-coil domain-containing protein 63 nan K23732
gene-evm.TU.Chr10.1976 rna-evm.model.Chr10.1976 Chr10 60643139 60685729 PREDICTED: Nephrocystin-4 GO:0005856;GO:0090090;GO:0097730 K16478
gene-evm.TU.Chr10.1977 rna-evm.model.Chr10.1977 Chr10 60688218 60688792 PREDICTED: tripartite motif-containing protein 2/3 nan K12026
gene-evm.TU.Chr10.1978 rna-evm.model.Chr10.1978.1 Chr10 60827618 60878974 PREDICTED: Forkhead-associated domain-containing protein 1 GO:0005515 K20283
gene-evm.TU.Chr10.1979 rna-evm.model.Chr10.1979 Chr10 60879188 60888178 PREDICTED: Protein/nucleic acid deglycase DJ-1 nan K05687

For more detailed data, you can explore the Download section to access the full dataset.