CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1981 rna-evm.model.Chr10.1981 Chr10 60896293 60903865 PREDICTED: Eukaryotic translation initiation factor 4 gamma 1 GO:0003723;GO:0005515 K03260
gene-evm.TU.Chr10.1982_evm.TU.Chr10.1984 rna-evm.model.Chr10.1982_evm.model.Chr10.1984 Chr10 60905537 60918025 PREDICTED: Glyoxylate reductase/hydroxypyruvate reductase GO:0016616;GO:0051287;GO:0055114 K00049
gene-evm.TU.Chr10.1985 rna-evm.model.Chr10.1985 Chr10 60928546 60933873 PREDICTED: Glyoxylate reductase/hydroxypyruvate reductase GO:0016616;GO:0051287;GO:0055114 K00049
gene-evm.TU.Chr10.1986 rna-evm.model.Chr10.1986 Chr10 60937041 60940222 PREDICTED: Glyoxylate reductase/hydroxypyruvate reductase GO:0016616;GO:0051287;GO:0055114 K00049
gene-evm.TU.Chr10.1987 rna-evm.model.Chr10.1987 Chr10 60940278 60942052 PREDICTED: ariadne-1 [EC:2.3.2.31] GO:0004842;GO:0016567 K11969
gene-evm.TU.Chr10.1988 rna-evm.model.Chr10.1988 Chr10 60942601 60945538 PREDICTED: Ubiquitin-60S ribosomal protein L40 GO:0005515 K04551
gene-evm.TU.Chr10.1989 rna-evm.model.Chr10.1989 Chr10 60955332 60967321 PREDICTED: Caspase-2 GO:0004197;GO:0006508;GO:0008234;GO:0042981 K04399
gene-evm.TU.Chr10.199 rna-evm.model.Chr10.199 Chr10 6842188 6847515 PREDICTED: Acetylcholine receptor subunit delta GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr10.1990 rna-evm.model.Chr10.1990 Chr10 60972674 60983592 PREDICTED: Transmembrane protein 201 GO:0005639 K20265
gene-evm.TU.Chr10.1991 rna-evm.model.Chr10.1991 Chr10 60988651 60993193 PREDICTED: Sigma non-opioid intracellular receptor 1 nan K20719

For more detailed data, you can explore the Download section to access the full dataset.