CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1954 rna-evm.model.Chr10.1954 Chr10 59848566 59871722 PREDICTED: trichohyalin-like, partial nan K25817
gene-evm.TU.Chr10.1955 rna-evm.model.Chr10.1955 Chr10 59876076 59884292 uncharacterized protein nan nan
gene-evm.TU.Chr10.1956 rna-evm.model.Chr10.1956 Chr10 59900776 59922662 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr10.1958 rna-evm.model.Chr10.1958 Chr10 59999384 60011639 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr10.1959 rna-evm.model.Chr10.1959 Chr10 60020480 60021242 uncharacterized protein nan nan
gene-evm.TU.Chr10.196 rna-evm.model.Chr10.196 Chr10 6814327 6822257 PREDICTED: Acetylcholine receptor subunit gamma GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr10.1961 rna-evm.model.Chr10.1961 Chr10 60201388 60201720 PREDICTED: Transposable element Tc1 transposase nan K07494
gene-evm.TU.Chr10.1966 rna-evm.model.Chr10.1966 Chr10 60520802 60521134 PREDICTED: Transposable element Tc1 transposase nan K07494
gene-evm.TU.Chr10.1968 rna-evm.model.Chr10.1968 Chr10 60568006 60568785 uncharacterized protein nan K26274
gene-evm.TU.Chr10.1969 rna-evm.model.Chr10.1969 Chr10 60568871 60583412 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D GO:0003676;GO:0003677 K10696

For more detailed data, you can explore the Download section to access the full dataset.