CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1935 rna-evm.model.Chr10.1935 Chr10 59398854 59400873 PREDICTED: Xyloside xylosyltransferase 1 GO:0016757 K23800
gene-evm.TU.Chr10.1936 rna-evm.model.Chr10.1936 Chr10 59412117 59495093 PREDICTED: Anoctamin-7 GO:0046983;GO:0061588 K19501
gene-evm.TU.Chr10.1938_evm.TU.Chr10.1937 rna-evm.model.Chr10.1938_evm.model.Chr10.1937 Chr10 59499606 59540453 PREDICTED: low-density lipoprotein receptor-related protein 3/10/12 nan K24360
gene-evm.TU.Chr10.1939 rna-evm.model.Chr10.1939 Chr10 59550064 59554374 PREDICTED: low-density lipoprotein receptor-related protein 12 GO:0005515 K24360
gene-evm.TU.Chr10.1941 rna-evm.model.Chr10.1941 Chr10 59576769 59581642 PREDICTED: SRC kinase signaling inhibitor 1 nan K13256
gene-evm.TU.Chr10.1944_evm.TU.Chr10.1940 rna-evm.model.Chr10.1944_evm.model.Chr10.1940 Chr10 59557462 59676739 PREDICTED: low-density lipoprotein receptor-related protein 3/10/12 GO:0005515 K24360
gene-evm.TU.Chr10.1947 rna-evm.model.Chr10.1947 Chr10 59728898 59735056 PREDICTED: trichohyalin nan K19533
gene-evm.TU.Chr10.195 rna-evm.model.Chr10.195 Chr10 6749235 6800678 PREDICTED: Chromodomain-helicase-DNA-binding protein 3 GO:0005524 K14435
gene-evm.TU.Chr10.1951 rna-evm.model.Chr10.1951 Chr10 59777556 59782566 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12021
gene-evm.TU.Chr10.1952 rna-evm.model.Chr10.1952 Chr10 59814064 59825092 uncharacterized protein nan K08788

For more detailed data, you can explore the Download section to access the full dataset.