CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1284 rna-evm.model.Chr1.1284 Chr1 40151414 40163051 PREDICTED: Pleiotropic regulator 1 GO:0005515 K12862
gene-evm.TU.Chr1.1285 rna-evm.model.Chr1.1285 Chr1 40165564 40187937 PREDICTED: Minichromosome maintenance domain-containing protein 2 GO:0003677;GO:0005524;GO:0006270 K10726
gene-evm.TU.Chr1.1287 rna-evm.model.Chr1.1287 Chr1 40197265 40198440 PREDICTED: Inositol phosphoceramide mannosyltransferase 2 nan K22721
gene-evm.TU.Chr1.1288 rna-evm.model.Chr1.1288 Chr1 40203684 40205151 uncharacterized protein nan K14460
gene-evm.TU.Chr1.1289 rna-evm.model.Chr1.1289 Chr1 40231473 40235690 uncharacterized protein nan K24191
gene-evm.TU.Chr1.1290 rna-evm.model.Chr1.1290 Chr1 40238575 40240993 PREDICTED: Inositol phosphoceramide mannosyltransferase 2 nan K22721
gene-evm.TU.Chr1.1291 rna-evm.model.Chr1.1291 Chr1 40243900 40252011 PREDICTED: Protein Red GO:0005634 K13109
gene-evm.TU.Chr1.1292 rna-evm.model.Chr1.1292 Chr1 40263394 40264721 PREDICTED: CD109 antigen nan K11548
gene-evm.TU.Chr1.1294 rna-evm.model.Chr1.1294 Chr1 40272170 40274344 PREDICTED: Neurofilament medium polypeptide nan K03006
gene-evm.TU.Chr1.1296 rna-evm.model.Chr1.1296 Chr1 40289960 40294225 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.