CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1269 rna-evm.model.Chr1.1269 Chr1 39187657 39189166 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K09060
gene-evm.TU.Chr1.1272 rna-evm.model.Chr1.1272.2 Chr1 39377254 39383192 PREDICTED: Acetylcholinesterase GO:0004104 K01050
gene-evm.TU.Chr1.1273 rna-evm.model.Chr1.1273.1 Chr1 39394499 39492288 PREDICTED: Anoctamin-7 GO:0046983 K19499
gene-evm.TU.Chr1.1274 rna-evm.model.Chr1.1274 Chr1 39500844 39517967 PREDICTED: F-box/LRR-repeat protein 21 GO:0005515 K10269
gene-evm.TU.Chr1.1277 rna-evm.model.Chr1.1277 Chr1 39582511 39603030 PREDICTED: Brachyurin GO:0004252;GO:0004930;GO:0006508;GO:0007186;GO:0016020 K09640
gene-evm.TU.Chr1.1278 rna-evm.model.Chr1.1278 Chr1 39621403 39624853 PREDICTED: Fibrinolytic enzyme, isozyme C GO:0004252;GO:0006508 K01312
gene-evm.TU.Chr1.1279 rna-evm.model.Chr1.1279 Chr1 39625756 39629165 PREDICTED: Chymotrypsinogen A GO:0004252;GO:0006508 K01312
gene-evm.TU.Chr1.1280 rna-evm.model.Chr1.1280 Chr1 39666850 39670222 PREDICTED: Fibrinolytic enzyme, isozyme C GO:0004252;GO:0006508 K01312
gene-evm.TU.Chr1.1282 rna-evm.model.Chr1.1282 Chr1 39963551 40125601 PREDICTED: Neurobeachin nan K24183
gene-evm.TU.Chr1.1283 rna-evm.model.Chr1.1283 Chr1 40128934 40144050 PREDICTED: Septin-8 GO:0005525 K16939

For more detailed data, you can explore the Download section to access the full dataset.