CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1889 rna-evm.model.Chr10.1889 Chr10 58050014 58067856 uncharacterized protein nan K21695
gene-evm.TU.Chr10.189 rna-evm.model.Chr10.189 Chr10 6488665 6669151 PREDICTED: Receptor-type tyrosine-protein phosphatase alpha GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr10.1890 rna-evm.model.Chr10.1890 Chr10 58076158 58106675 PREDICTED: poly [ADP-ribose] polymerase [EC:2.4.2.30] nan K10385
gene-evm.TU.Chr10.1891 rna-evm.model.Chr10.1891 Chr10 58113205 58114356 PREDICTED: YjcZ family sporulation protein nan K19461
gene-evm.TU.Chr10.1893 rna-evm.model.Chr10.1893 Chr10 58122535 58130507 PREDICTED: Ice nucleation protein InaA nan nan
gene-evm.TU.Chr10.1894 rna-evm.model.Chr10.1894 Chr10 58142892 58157737 PREDICTED: Peroxisome assembly protein 12 GO:0005779;GO:0006625;GO:0008022;GO:0008270 K13345
gene-evm.TU.Chr10.1895 rna-evm.model.Chr10.1895 Chr10 58161239 58202263 PREDICTED: Leucine-rich repeat-containing protein 71 GO:0005515 K14319
gene-evm.TU.Chr10.1896 rna-evm.model.Chr10.1896 Chr10 58212052 58218818 PREDICTED: Leucine-rich repeat-containing protein 71 nan K25450
gene-evm.TU.Chr10.1897 rna-evm.model.Chr10.1897 Chr10 58222163 58267460 PREDICTED: Sodium/myo-inositol cotransporter GO:0016020;GO:0022857;GO:0055085 K14383
gene-evm.TU.Chr10.1898 rna-evm.model.Chr10.1898 Chr10 58293147 58302817 uncharacterized protein nan K16795

For more detailed data, you can explore the Download section to access the full dataset.