CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1827 rna-evm.model.Chr10.1827 Chr10 56058118 56059119 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255
gene-evm.TU.Chr10.1831 rna-evm.model.Chr10.1831 Chr10 56226119 56228948 uncharacterized protein nan K00678
gene-evm.TU.Chr10.1832 rna-evm.model.Chr10.1832 Chr10 56318530 56323283 uncharacterized protein nan K14398
gene-evm.TU.Chr10.1834 rna-evm.model.Chr10.1834 Chr10 56346960 56347919 uncharacterized protein nan K11985
gene-evm.TU.Chr10.1837 rna-evm.model.Chr10.1837 Chr10 56444636 56451498 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr10.1839 rna-evm.model.Chr10.1839 Chr10 56518466 56521663 PREDICTED: Leucine-rich repeat-containing protein 71 nan K25450
gene-evm.TU.Chr10.1840 rna-evm.model.Chr10.1840 Chr10 56523259 56691836 PREDICTED: Sodium/myo-inositol cotransporter GO:0016020;GO:0022857;GO:0055085 K14391
gene-evm.TU.Chr10.1842 rna-evm.model.Chr10.1842 Chr10 56770718 56773062 uncharacterized protein nan nan
gene-evm.TU.Chr10.1843 rna-evm.model.Chr10.1843 Chr10 56775101 56778038 PREDICTED: Protein ALP1-like nan K23222
gene-evm.TU.Chr10.1845 rna-evm.model.Chr10.1845 Chr10 56844950 56849476 PREDICTED: Sodium/myo-inositol cotransporter GO:0016020;GO:0022857;GO:0055085 K14383

For more detailed data, you can explore the Download section to access the full dataset.