CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1251 rna-evm.model.Chr1.1251 Chr1 38354561 38361618 PREDICTED: Prothoracicotropic hormone nan K20226
gene-evm.TU.Chr1.1253 rna-evm.model.Chr1.1253 Chr1 38392356 38400172 PREDICTED: Prothoracicotropic hormone nan K20226
gene-evm.TU.Chr1.1254 rna-evm.model.Chr1.1254 Chr1 38402437 38403588 PREDICTED: protein kinase D [EC:2.7.11.13] nan K07164
gene-evm.TU.Chr1.1258 rna-evm.model.Chr1.1258 Chr1 38737605 38767820 PREDICTED: exocyst complex component 1 nan K21585
gene-evm.TU.Chr1.126 rna-evm.model.Chr1.126 Chr1 4129886 4135769 PREDICTED: Allene oxide synthase-lipoxygenase protein GO:0016702;GO:0046872;GO:0055114 K00461
gene-evm.TU.Chr1.1262 rna-evm.model.Chr1.1262 Chr1 38809558 38817990 PREDICTED: receptor-type tyrosine-protein phosphatase T [EC:3.1.3.48] nan K18033
gene-evm.TU.Chr1.1263 rna-evm.model.Chr1.1263 Chr1 38889665 39037280 PREDICTED: Receptor-type tyrosine-protein phosphatase mu GO:0004725;GO:0006470;GO:0016311;GO:0016791 K13297
gene-evm.TU.Chr1.1264 rna-evm.model.Chr1.1264 Chr1 39037471 39039048 PREDICTED: Tigger transposable element-derived protein 1 GO:0003676 K22594
gene-evm.TU.Chr1.1266 rna-evm.model.Chr1.1266 Chr1 39078642 39083120 PREDICTED: Glycine receptor subunit alpha-2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05193
gene-evm.TU.Chr1.1268 rna-evm.model.Chr1.1268 Chr1 39176964 39185310 uncharacterized protein nan K11272

For more detailed data, you can explore the Download section to access the full dataset.