CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1786 rna-evm.model.Chr10.1786 Chr10 54918056 54935685 PREDICTED: Suprabasin nan K01406
gene-evm.TU.Chr10.1788 rna-evm.model.Chr10.1788 Chr10 54943122 54956822 uncharacterized protein nan K06846
gene-evm.TU.Chr10.1789 rna-evm.model.Chr10.1789 Chr10 54956881 54963634 uncharacterized protein nan K06846
gene-evm.TU.Chr10.1790 rna-evm.model.Chr10.1790 Chr10 54969288 54971154 uncharacterized protein nan nan
gene-evm.TU.Chr10.1791 rna-evm.model.Chr10.1791 Chr10 54977095 55011514 PREDICTED: Zinc finger and BTB domain-containing protein 18 GO:0003676 K24385
gene-evm.TU.Chr10.1792 rna-evm.model.Chr10.1792 Chr10 55017155 55020717 PREDICTED: Transcription factor HES-1 GO:0003677;GO:0006355 K09090
gene-evm.TU.Chr10.1794 rna-evm.model.Chr10.1794 Chr10 55036337 55040460 PREDICTED: Alpha-(1,6)-fucosyltransferase GO:0005515 K00717
gene-evm.TU.Chr10.1796 rna-evm.model.Chr10.1796 Chr10 55056982 55065353 PREDICTED: Endoglucanase E-4 GO:0004553;GO:0005975;GO:0030246 K01179
gene-evm.TU.Chr10.1798 rna-evm.model.Chr10.1798 Chr10 55105156 55105491 PREDICTED: EGF domain-specific O-linked N-acetylglucosamine transferase GO:0016757 K03714
gene-evm.TU.Chr10.1799 rna-evm.model.Chr10.1799 Chr10 55105545 55106465 PREDICTED: Beta-1,2-xylosyltransferase RCN11 GO:0016757 K03714

For more detailed data, you can explore the Download section to access the full dataset.