CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1813 rna-evm.model.Chr10.1813 Chr10 55848012 55848287 uncharacterized protein nan nan
gene-evm.TU.Chr10.1814 rna-evm.model.Chr10.1814 Chr10 55859382 55865197 uncharacterized protein nan K26532
gene-evm.TU.Chr10.1815 rna-evm.model.Chr10.1815 Chr10 55865385 55870572 PREDICTED: Tigger transposable element-derived protein 2 GO:0003676 K07494
gene-evm.TU.Chr10.1818 rna-evm.model.Chr10.1818 Chr10 55927317 55930645 PREDICTED: Fucolectin-6 nan K25767
gene-evm.TU.Chr10.182 rna-evm.model.Chr10.182 Chr10 6389632 6390795 PREDICTED: tyrosine-protein phosphatase non-receptor type 12/18/22 [EC:3.1.3.48] nan K23965
gene-evm.TU.Chr10.1822 rna-evm.model.Chr10.1822 Chr10 56031763 56032630 uncharacterized protein nan nan
gene-evm.TU.Chr10.1823 rna-evm.model.Chr10.1823 Chr10 56034580 56039591 PREDICTED: enolase [EC:4.2.1.11] nan K09168
gene-evm.TU.Chr10.1824 rna-evm.model.Chr10.1824 Chr10 56041159 56048726 uncharacterized protein nan K26532
gene-evm.TU.Chr10.1825 rna-evm.model.Chr10.1825 Chr10 56052764 56054846 PREDICTED: ATP-dependent DNA helicase PIF1 [EC:3.6.4.12] nan K11446
gene-evm.TU.Chr10.1826 rna-evm.model.Chr10.1826 Chr10 56055440 56057131 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] GO:0004803;GO:0006313 K23209

For more detailed data, you can explore the Download section to access the full dataset.