CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.175 rna-evm.model.Chr10.175 Chr10 6159490 6178062 PREDICTED: tripartite motif-containing protein 2/3 nan K10642
gene-evm.TU.Chr10.1750 rna-evm.model.Chr10.1750 Chr10 54217857 54219015 PREDICTED: tripartite motif-containing protein 2/3 nan K15156
gene-evm.TU.Chr10.1754 rna-evm.model.Chr10.1754 Chr10 54276683 54279896 PREDICTED: NLR family CARD domain-containing protein 3 nan K15156
gene-evm.TU.Chr10.1757 rna-evm.model.Chr10.1757 Chr10 54346966 54348110 PREDICTED: tripartite motif-containing protein 2/3 nan K15156
gene-evm.TU.Chr10.1758 rna-evm.model.Chr10.1758 Chr10 54348554 54353215 uncharacterized protein nan K07133
gene-evm.TU.Chr10.1760 rna-evm.model.Chr10.1760 Chr10 54356057 54356942 PREDICTED: AF4/FMR2 family member 4 nan K04223
gene-evm.TU.Chr10.1762 rna-evm.model.Chr10.1762 Chr10 54391961 54402096 uncharacterized protein nan K07133
gene-evm.TU.Chr10.1769 rna-evm.model.Chr10.1769 Chr10 54547731 54552821 PREDICTED: leucine-rich repeat protein SHOC2 nan K22266
gene-evm.TU.Chr10.1771 rna-evm.model.Chr10.1771 Chr10 54566624 54699910 PREDICTED: Actin filament-associated protein 1 nan K18616
gene-evm.TU.Chr10.1772 rna-evm.model.Chr10.1772 Chr10 54700595 54716427 PREDICTED: Thymidine kinase 2, mitochondrial nan K05961

For more detailed data, you can explore the Download section to access the full dataset.