CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.180 rna-evm.model.Chr10.180 Chr10 6363116 6372209 PREDICTED: E3 ubiquitin-protein ligase DZIP3 nan K10642
gene-evm.TU.Chr10.1800 rna-evm.model.Chr10.1800 Chr10 55110468 55111877 PREDICTED: Beta-1,2-xylosyltransferase RCN11 GO:0016757 K03714
gene-evm.TU.Chr10.1801 rna-evm.model.Chr10.1801 Chr10 55113936 55149913 PREDICTED: Endoglucanase A GO:0004553;GO:0005975 K01179
gene-evm.TU.Chr10.1805 rna-evm.model.Chr10.1805 Chr10 55440606 55505834 uncharacterized protein nan K07017
gene-evm.TU.Chr10.1806 rna-evm.model.Chr10.1806 Chr10 55515652 55516530 PREDICTED: Gastrula zinc finger protein XlCGF49.1 (Fragment) GO:0003676 K09191
gene-evm.TU.Chr10.1807 rna-evm.model.Chr10.1807 Chr10 55518094 55523113 uncharacterized protein nan nan
gene-evm.TU.Chr10.1808 rna-evm.model.Chr10.1808 Chr10 55552402 55567283 uncharacterized protein nan nan
gene-evm.TU.Chr10.1809 rna-evm.model.Chr10.1809 Chr10 55567332 55570533 PREDICTED: protein transport protein SEC24 nan K01196
gene-evm.TU.Chr10.1810 rna-evm.model.Chr10.1810 Chr10 55617296 55619269 uncharacterized protein nan K00678
gene-evm.TU.Chr10.1812 rna-evm.model.Chr10.1812 Chr10 55668556 55770847 PREDICTED: Echinoderm microtubule-associated protein-like CG42247 GO:0005515;GO:0035556 K18595

For more detailed data, you can explore the Download section to access the full dataset.