CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1735 rna-evm.model.Chr10.1735 Chr10 54001146 54008636 uncharacterized protein nan nan
gene-evm.TU.Chr10.1736 rna-evm.model.Chr10.1736 Chr10 54013562 54013915 PREDICTED: Putative apoptosis inhibitor ORF99 nan K16061
gene-evm.TU.Chr10.1737 rna-evm.model.Chr10.1737 Chr10 54013928 54014350 uncharacterized protein nan nan
gene-evm.TU.Chr10.1739 rna-evm.model.Chr10.1739 Chr10 54016807 54017994 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr10.174 rna-evm.model.Chr10.174 Chr10 5926069 5926548 PREDICTED: general transcription factor 3C polypeptide 3 (transcription factor C subunit 4) nan K13631
gene-evm.TU.Chr10.1740 rna-evm.model.Chr10.1740 Chr10 54018852 54019517 uncharacterized protein nan K02243
gene-evm.TU.Chr10.1741 rna-evm.model.Chr10.1741 Chr10 54024665 54026244 uncharacterized protein nan K27234
gene-evm.TU.Chr10.1742 rna-evm.model.Chr10.1742 Chr10 54027779 54029528 uncharacterized protein nan K26235
gene-evm.TU.Chr10.1744 rna-evm.model.Chr10.1744 Chr10 54087271 54092016 PREDICTED: leucine-rich repeat protein SHOC2 nan K11901
gene-evm.TU.Chr10.1746 rna-evm.model.Chr10.1746 Chr10 54122616 54142227 uncharacterized protein nan K23782

For more detailed data, you can explore the Download section to access the full dataset.