CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1703 rna-evm.model.Chr10.1703 Chr10 53490267 53492110 PREDICTED: 2-phosphoxylose phosphatase 1 nan K21403
gene-evm.TU.Chr10.1704 rna-evm.model.Chr10.1704 Chr10 53509402 53534205 PREDICTED: Endoglucanase E-4 GO:0004553;GO:0005509;GO:0005975;GO:0007156;GO:0016020 K01179
gene-evm.TU.Chr10.1705 rna-evm.model.Chr10.1705 Chr10 53535879 53537288 PREDICTED: Beta-1,2-xylosyltransferase RCN11 GO:0016757 K03714
gene-evm.TU.Chr10.1706 rna-evm.model.Chr10.1706 Chr10 53541544 53542830 PREDICTED: Beta-1,2-xylosyltransferase RCN11 GO:0016757 K03714
gene-evm.TU.Chr10.1707 rna-evm.model.Chr10.1707 Chr10 53545129 53570754 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K06252
gene-evm.TU.Chr10.1709 rna-evm.model.Chr10.1709 Chr10 53589798 53598119 PREDICTED: Endoglucanase E-4 GO:0004553;GO:0005975;GO:0030246 K01179
gene-evm.TU.Chr10.171 rna-evm.model.Chr10.171 Chr10 5697979 5698539 PREDICTED: Transposable element Tc1 transposase nan K07494
gene-evm.TU.Chr10.1710 rna-evm.model.Chr10.1710 Chr10 53608047 53612062 PREDICTED: Alpha-(1,6)-fucosyltransferase GO:0005515 K00717
gene-evm.TU.Chr10.1711 rna-evm.model.Chr10.1711 Chr10 53616919 53631669 PREDICTED: Transcription factor HES-1-A GO:0003677;GO:0006355;GO:0046983 K06054
gene-evm.TU.Chr10.1712 rna-evm.model.Chr10.1712 Chr10 53636525 53641239 PREDICTED: Zinc finger and BTB domain-containing protein 18 GO:0003676 K09191

For more detailed data, you can explore the Download section to access the full dataset.