CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1683 rna-evm.model.Chr10.1683 Chr10 53162313 53162777 uncharacterized protein nan K00477
gene-evm.TU.Chr10.1684 rna-evm.model.Chr10.1684 Chr10 53168094 53168764 uncharacterized protein nan nan
gene-evm.TU.Chr10.169 rna-evm.model.Chr10.169 Chr10 5613628 5616600 uncharacterized protein nan nan
gene-evm.TU.Chr10.1691 rna-evm.model.Chr10.1691 Chr10 53287740 53310415 PREDICTED: Sorbin and SH3 domain-containing protein 2 GO:0005515;GO:0008270 K23714
gene-evm.TU.Chr10.1693 rna-evm.model.Chr10.1693 Chr10 53346864 53347229 PREDICTED: coatomer subunit beta' nan nan
gene-evm.TU.Chr10.1695 rna-evm.model.Chr10.1695 Chr10 53349241 53354147 PREDICTED: E3 ubiquitin-protein ligase SH3RF1 GO:0005515 K12171
gene-evm.TU.Chr10.1697 rna-evm.model.Chr10.1697 Chr10 53387282 53388115 uncharacterized protein nan nan
gene-evm.TU.Chr10.1699 rna-evm.model.Chr10.1699 Chr10 53442602 53454867 PREDICTED: C-type lectin domain family 10 member A nan K06468
gene-evm.TU.Chr10.170 rna-evm.model.Chr10.170 Chr10 5616639 5619118 uncharacterized protein nan nan
gene-evm.TU.Chr10.1700 rna-evm.model.Chr10.1700 Chr10 53467746 53471765 uncharacterized protein nan K00477

For more detailed data, you can explore the Download section to access the full dataset.