CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1668 rna-evm.model.Chr10.1668 Chr10 52815070 52816215 uncharacterized protein nan K06532
gene-evm.TU.Chr10.1669 rna-evm.model.Chr10.1669 Chr10 52920344 52926772 PREDICTED: Fucolectin-3 nan K10481
gene-evm.TU.Chr10.1671 rna-evm.model.Chr10.1671 Chr10 52950627 52952187 PREDICTED: Fucolectin-5 nan nan
gene-evm.TU.Chr10.1672 rna-evm.model.Chr10.1672 Chr10 52970727 53005081 PREDICTED: DNA ligase 3 GO:0003677;GO:0003910;GO:0005524;GO:0006281;GO:0006310;GO:0008270 K10776
gene-evm.TU.Chr10.1675 rna-evm.model.Chr10.1675 Chr10 53018996 53019526 PREDICTED: Mariner Mos1 transposase nan K07494
gene-evm.TU.Chr10.1678 rna-evm.model.Chr10.1678 Chr10 53089113 53093377 PREDICTED: tripartite motif-containing protein 24 [EC:2.3.2.27] GO:0008270 K12026
gene-evm.TU.Chr10.1679 rna-evm.model.Chr10.1679 Chr10 53096192 53106015 PREDICTED: E3 ubiquitin-protein ligase SH3RF1 GO:0005515 K12171
gene-evm.TU.Chr10.168 rna-evm.model.Chr10.168 Chr10 5502355 5502575 PREDICTED: Transposable element Tcb1 transposase nan K07494
gene-evm.TU.Chr10.1681 rna-evm.model.Chr10.1681 Chr10 53137480 53147734 PREDICTED: Lactose-binding lectin l-2 nan K06468
gene-evm.TU.Chr10.1682 rna-evm.model.Chr10.1682 Chr10 53161751 53162239 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.