CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1241 rna-evm.model.Chr1.1241 Chr1 38100008 38113237 PREDICTED: RING finger protein nhl-1 GO:0046872 K12003
gene-evm.TU.Chr1.1242 rna-evm.model.Chr1.1242 Chr1 38117494 38127730 PREDICTED: Estrogen sulfotransferase GO:0008146 K01016
gene-evm.TU.Chr1.1243 rna-evm.model.Chr1.1243 Chr1 38138507 38170629 PREDICTED: Chromosome-associated kinesin KIF4 GO:0003777;GO:0005524;GO:0007018;GO:0008017 K10394
gene-evm.TU.Chr1.1244 rna-evm.model.Chr1.1244 Chr1 38178051 38213775 PREDICTED: Histone PARylation factor 1 nan K26250
gene-evm.TU.Chr1.1245 rna-evm.model.Chr1.1245 Chr1 38239955 38266452 PREDICTED: Myophilin GO:0005515 K20526
gene-evm.TU.Chr1.1247 rna-evm.model.Chr1.1247 Chr1 38280307 38280834 uncharacterized protein nan nan
gene-evm.TU.Chr1.1248 rna-evm.model.Chr1.1248 Chr1 38280881 38281576 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr1.1249 rna-evm.model.Chr1.1249 Chr1 38309766 38310702 PREDICTED: Protein trunk nan K20226
gene-evm.TU.Chr1.125 rna-evm.model.Chr1.125 Chr1 4127477 4129820 PREDICTED: Plasminogen nan K01315
gene-evm.TU.Chr1.1250 rna-evm.model.Chr1.1250 Chr1 38346219 38350157 PREDICTED: Prothoracicotropic hormone nan K20226

For more detailed data, you can explore the Download section to access the full dataset.