CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1640 rna-evm.model.Chr10.1640 Chr10 51911719 51925307 uncharacterized protein nan K26186
gene-evm.TU.Chr10.1641 rna-evm.model.Chr10.1641 Chr10 51934566 51939741 PREDICTED: Carbohydrate sulfotransferase 1 GO:0008146 K01022
gene-evm.TU.Chr10.1643 rna-evm.model.Chr10.1643 Chr10 51949196 51953433 PREDICTED: Ciliogenesis and planar polarity effector 2 GO:0003924;GO:0005525 K22860
gene-evm.TU.Chr10.1645 rna-evm.model.Chr10.1645 Chr10 51985927 51992160 PREDICTED: OTU domain-containing protein 3 nan K13717
gene-evm.TU.Chr10.1646 rna-evm.model.Chr10.1646 Chr10 51994643 51996734 PREDICTED: Jerky protein homolog-like GO:0003676;GO:0003677 K07494
gene-evm.TU.Chr10.1647 rna-evm.model.Chr10.1647 Chr10 52005328 52033502 PREDICTED: ER membrane protein complex subunit 1 GO:0072546 K23562
gene-evm.TU.Chr10.1648 rna-evm.model.Chr10.1648 Chr10 52042878 52044940 PREDICTED: Heavy metal-binding protein HIP nan K24236
gene-evm.TU.Chr10.1649 rna-evm.model.Chr10.1649 Chr10 52056785 52066535 PREDICTED: NACHT, LRR and PYD domains-containing protein 3 nan K22266
gene-evm.TU.Chr10.165 rna-evm.model.Chr10.165 Chr10 5351008 5366138 uncharacterized protein nan K04763
gene-evm.TU.Chr10.1650 rna-evm.model.Chr10.1650 Chr10 52104623 52115857 PREDICTED: Large subunit GTPase 1 homolog GO:0005525 K14539

For more detailed data, you can explore the Download section to access the full dataset.