CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1621 rna-evm.model.Chr10.1621 Chr10 51446912 51505014 PREDICTED: Glutamate carboxypeptidase 2 nan K14592
gene-evm.TU.Chr10.1623 rna-evm.model.Chr10.1623 Chr10 51573904 51582685 PREDICTED: Aminopeptidase N GO:0006508;GO:0008237;GO:0008270 K11140
gene-evm.TU.Chr10.1628 rna-evm.model.Chr10.1628 Chr10 51631925 51636272 PREDICTED: Solute carrier family 2, facilitated glucose transporter member 1 GO:0016020;GO:0022857;GO:0055085 K07299
gene-evm.TU.Chr10.1630 rna-evm.model.Chr10.1630 Chr10 51642973 51679328 PREDICTED: Solute carrier family 2, facilitated glucose transporter member 3 GO:0016020;GO:0016020;GO:0022857;GO:0055085 K07299
gene-evm.TU.Chr10.1631 rna-evm.model.Chr10.1631 Chr10 51710162 51711074 PREDICTED: Solute carrier family 12 member 9 nan K14429
gene-evm.TU.Chr10.1632 rna-evm.model.Chr10.1632 Chr10 51714436 51730831 PREDICTED: Glucose transporter type 1 GO:0016020;GO:0016020;GO:0022857;GO:0055085 K07299
gene-evm.TU.Chr10.1635 rna-evm.model.Chr10.1635 Chr10 51780535 51789928 PREDICTED: Transcription intermediary factor 1-beta GO:0008270 K12026
gene-evm.TU.Chr10.1636 rna-evm.model.Chr10.1636 Chr10 51826562 51829302 PREDICTED: calreticulin nan K02143
gene-evm.TU.Chr10.1637 rna-evm.model.Chr10.1637 Chr10 51843576 51872018 PREDICTED: Glucose transporter type 1 GO:0016020;GO:0016020;GO:0022857;GO:0055085 K07299
gene-evm.TU.Chr10.1638 rna-evm.model.Chr10.1638 Chr10 51881778 51899083 PREDICTED: Solute carrier family 12 member 9 GO:0005215;GO:0006811;GO:0016020;GO:0055085 K14429

For more detailed data, you can explore the Download section to access the full dataset.