CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1232 rna-evm.model.Chr1.1232 Chr1 37835893 37837780 PREDICTED: Complement factor B nan K01332
gene-evm.TU.Chr1.1233 rna-evm.model.Chr1.1233 Chr1 37849016 37849462 uncharacterized protein nan nan
gene-evm.TU.Chr1.1234 rna-evm.model.Chr1.1234 Chr1 37849497 37850178 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.1235 rna-evm.model.Chr1.1235 Chr1 37857432 37859236 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr1.1236 rna-evm.model.Chr1.1236 Chr1 37872333 37873753 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr1.1237 rna-evm.model.Chr1.1237 Chr1 37878712 37989181 PREDICTED: E3 ubiquitin-protein ligase HERC2 GO:0004842;GO:0008270;GO:0016567;GO:0046872 K10595
gene-evm.TU.Chr1.1238 rna-evm.model.Chr1.1238 Chr1 37999545 38001077 PREDICTED: von Willebrand factor C domain-containing protein 2-like GO:0005515 K24521
gene-evm.TU.Chr1.1239 rna-evm.model.Chr1.1239 Chr1 38003060 38025155 PREDICTED: SH3 domain-containing protein 19 GO:0005515 K12470
gene-evm.TU.Chr1.124 rna-evm.model.Chr1.124 Chr1 4049529 4107232 PREDICTED: Arachidonate 5-lipoxygenase GO:0005515;GO:0016702;GO:0046872;GO:0055114 K00461
gene-evm.TU.Chr1.1240 rna-evm.model.Chr1.1240 Chr1 38032447 38092097 PREDICTED: ATP-dependent DNA helicase DDX11 GO:0003676;GO:0003677;GO:0003678;GO:0005524;GO:0006139;GO:0004386;GO:0016818 K11273

For more detailed data, you can explore the Download section to access the full dataset.