CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1221 rna-evm.model.Chr1.1221 Chr1 37531856 37537306 PREDICTED: Neurotactin nan K03929
gene-evm.TU.Chr1.1223 rna-evm.model.Chr1.1223 Chr1 37545318 37565270 PREDICTED: Syntaxin-binding protein 4 GO:0005515 K15302
gene-evm.TU.Chr1.1224 rna-evm.model.Chr1.1224 Chr1 37567258 37579693 PREDICTED: Ubiquitin-like protein 3 GO:0005515 K14027
gene-evm.TU.Chr1.1225 rna-evm.model.Chr1.1225 Chr1 37590692 37594575 PREDICTED: Heat shock 70 kDa protein 12A nan K04044
gene-evm.TU.Chr1.1226 rna-evm.model.Chr1.1226 Chr1 37595154 37654078 uncharacterized protein nan K17586
gene-evm.TU.Chr1.1227 rna-evm.model.Chr1.1227 Chr1 37663934 37664767 PREDICTED: EMILIN-2 nan K24236
gene-evm.TU.Chr1.1228 rna-evm.model.Chr1.1228 Chr1 37665408 37666283 PREDICTED: EMILIN-1 nan K24236
gene-evm.TU.Chr1.1229 rna-evm.model.Chr1.1229 Chr1 37676771 37677613 PREDICTED: Caprin-2 nan K24236
gene-evm.TU.Chr1.123 rna-evm.model.Chr1.123 Chr1 4025602 4040258 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan K08816
gene-evm.TU.Chr1.1230 rna-evm.model.Chr1.1230 Chr1 37686759 37704015 PREDICTED: Protocadherin-9 GO:0005509;GO:0007156;GO:0016020 K16498

For more detailed data, you can explore the Download section to access the full dataset.