CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1307 rna-evm.model.Chr10.1307 Chr10 40834104 40836958 PREDICTED: ADP-ribosylation factor-like protein 2 GO:0005525 K07942
gene-evm.TU.Chr10.1308 rna-evm.model.Chr10.1308 Chr10 40867047 40882937 PREDICTED: ADP-ribosylation factor 1 GO:0005525 K07937
gene-evm.TU.Chr10.1309 rna-evm.model.Chr10.1309 Chr10 40939653 40990207 PREDICTED: TELO2-interacting protein 1 homolog nan K20403
gene-evm.TU.Chr10.131 rna-evm.model.Chr10.131 Chr10 4647971 4649992 PREDICTED: DNA polymerase III PolC-type nan K10054
gene-evm.TU.Chr10.1310 rna-evm.model.Chr10.1310 Chr10 41029528 41047831 PREDICTED: E3 ubiquitin-protein ligase Midline-1 GO:0005515;GO:0008270 K08285
gene-evm.TU.Chr10.1311 rna-evm.model.Chr10.1311.1 Chr10 41052313 41139672 PREDICTED: SH2 domain-containing protein 5 GO:0005515 K23701
gene-evm.TU.Chr10.1312 rna-evm.model.Chr10.1312 Chr10 41146055 41148770 PREDICTED: Hyaluronidase GO:0004415;GO:0005975 K01197
gene-evm.TU.Chr10.1313 rna-evm.model.Chr10.1313 Chr10 41151381 41165048 PREDICTED: Membrane metallo-endopeptidase-like 1 GO:0004222;GO:0006508 K08635
gene-evm.TU.Chr10.1314 rna-evm.model.Chr10.1314.1 Chr10 41190049 41200210 uncharacterized protein nan K22190
gene-evm.TU.Chr10.1316 rna-evm.model.Chr10.1316.1 Chr10 41196290 41206778 uncharacterized protein nan K07112

For more detailed data, you can explore the Download section to access the full dataset.